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最近の研究業績

2010年以降に当研究室が論文として発表した研究業績の一覧です。
2013年以降の論文は各教員のページをご覧ください。

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 2008年～2009年
 2005年～2007年

2012年

  • Structure of Beta-1,4-mannanase from the common sea hare Aplysia kurodai at 1.05 Å resolution
  • Mizutani K, Tsuchiya S, Toyoda M, Nanbu Y, Tominaga K, Yuasa K, Takahashi N, Tsuji A, Mikami B
  • Acta Crystallogr Sect F Struct Biol Cryst Commun. 2012 Oct 1;68(Pt 10):1164-8. doi: 10.1107/S1744309112037074. Epub 2012 Sep 25.  »  [Pubmed]
  • Crystal structure of a major seed storage protein, 11S proglobulin, from Amaranthus hypochondriacus: Insight into its physico-chemical properties
  • Tandang-Silvas MR, Cabanos CS, Carrazco Peña LD, De La Rosa AP, Osuna-Castro JA, Utsumi S, Mikami B, Maruyama N
  • Food Chem. 2012 Nov 15;135(2):819-26. Epub 2012 May 2.  »  [Pubmed]
  • Structural and functional characterization of recombinant medaka fish Alpha-amylase expressed in yeast Pichia pastoris
  • Mizutani K, Toyoda M, Otake Y, Yoshioka S, Takahashi N, Mikami B
  • Biochim Biophys Acta. 2012 Aug;1824(8):954-62. Epub 2012 May 18.  »  [Pubmed]
  • Recognition of Heteropolysaccharide Alginate by Periplasmic Solute-Binding Proteins of a Bacterial ABC Transporter.
  • Nishitani Y, Maruyama Y, Itoh T, Mikami B, Hashimoto W, Murata K
  • Biochemistry. 2012 May 1;51(17):3622-33. Epub 2012 Apr 23.  »  [Pubmed]
  • Crystallization and preliminary X-ray analysis of alginate importer from Sphingomonas sp. A1.
  • Maruyama Y, Itoh T, Nishitani Y, Mikami B, Hashimoto W, Murata K
  • Acta Crystallogr Sect F Struct Biol Cryst Commun. 2012 Mar 1;68(Pt 3):317-20. Epub 2012 Feb 23.  »  [Pubmed]
  • The extension peptide of plant ferritin from sea lettuce contributes to shell stability and surface hydrophobicity.
  • Masuda T, Morimoto S, Mikami B, Toyohara H
  • Protein Sci. 2012 Jun;21(6):786-96. doi: 10.1002/pro.2061. Epub 2012 Apr 18.  »  [Pubmed]
  • Atomic structure of the sweet-tasting protein thaumatin I at pH 8.0 reveals the large disulfide-rich region in domain II to be sensitive to a pH change.
  • Masuda T, Ohta K, Mikami B, Kitabatake N, Tani F
  • Biochem Biophys Res Commun. 2012 Mar 2;419(1):72-6. Epub 2012 Feb 3.  »  [Pubmed]
  • Crystallization and preliminary X-ray analysis of pyridoxine 4-oxidase, the first enzyme in pyridoxine degradation pathway I
  • Mugo AN, Kobayashi J, Mikami B, Ohnishi K, Yagi T
  • Acta Crystallogr Sect F Struct Biol Cryst Commun. 2012 Jan 1;68(Pt 1):66-68. Epub 2011 Dec 24.  »  [Pubmed]
  • [Review] X-ray structures of transferrins and related proteins
  • Mizutani K, Toyoda M, Mikami B
  • Biochim Biophys Acta. 2012 Mar;1820(3):203-11. Epub 2011 Aug 9.  »  [Pubmed]

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2011年

  • Crystal structures of protein-glutaminase and its pro forms converted into enzyme-substrate complex
  • Hashizume R, Maki Y, Mizutani K, Takahashi N, Matsubara H, Sugita A, Sato K, Yamaguchi S, Mikami B
  • J Biol Chem. 2011 Nov 4;286(44):38691-38702. Epub 2011 Sep 16.  »  [Pubmed]
  • Crystal structure of phosphopantetheine adenylyltransferase from Enterococcus faecalis in the ligand-unbound state and in complex with ATP and pantetheine
  • Yoon HJ, Kang JY, Mikami B, Lee HH, Suh SW
  • Mol Cells. 2011 Nov;32(5):431-435. Epub 2011 Sep 9.  »  [Pubmed]
  • Crystal structure of the major peanut allergen Ara h 1
  • Cabanos C, Urabe H, Tandang-Silvas MR, Utsumi S, Mikami B, Maruyama N
  • Mol Immunol. 2011 Oct;49(1-2):115-123. Epub 2011 Sep 7.  »  [Pubmed]
  • Formate Oxidase, an Enzyme of the Glucose-Methanol-Choline Oxidoreductase Family, Has a His-Arg Pair and 8-Formyl-FAD at the Catalytic Site
  • Doubayashi D, Ootake T, Maeda Y, Oki M, Tokunaga Y, Sakurai A, Nagaosa Y, Mikami B, Uchida H
  • Biosci Biotechnol Biochem. 2011 Sep 23;75(9):1662-1667. Epub 2011 Sep 7.  »  [Pubmed]
  • Structural determinants of discrimination of NAD+ from NADH in yeast mitochondrial NADH kinase Pos5
  • Ando T, Ohashi K, Ochiai A, Mikami B, Kawai S, Murata K
  • J Biol Chem. 2011 Aug 26;286(34):29984-29992. Epub 2011 Jul 5.  »  [Pubmed]
  • Crystal structure of the sweet-tasting protein thaumatin II at 1.27Å
  • Masuda T, Ohta K, Tani F, Mikami B, Kitabatake N
  • Biochem Biophys Res Commun. 2011 Jul 8;410(3):457-460. Epub 2011 Jun 6.  »  [Pubmed]
  • Expression, crystallization and preliminary X-ray diffraction studies of thermostable β-1,3-xylanase from Thermotoga neapolitana strain DSM 4359
  • Okazaki F, Ogino C, Kondo A, Mikami B, Kurebayashi Y, Tsuruta H
  • Acta Crystallogr Sect F Struct Biol Cryst Commun. 2011 Jul 1;67(Pt 7):779-781. Epub 2011 Jun 30.  »  [Pubmed]
  • High-resolution structure of the recombinant sweet-tasting protein thaumatin I
  • Masuda T, Ohta K, Mikami B, Kitabatake N
  • Acta Crystallogr Sect F Struct Biol Cryst Commun. 2011 Jun 1;67(Pt 6):652-658. Epub 2011 May 24.  »  [Pubmed]
  • High-throughput construction of expression system using yeast Pichia pastoris, and its application to membrane proteins
  • Mizutani K, Yoshioka S, Mizutani Y, Iwata S, Mikami B
  • Protein Expr Purif. 2011 May;77(1):1-8. Epub 2010 Dec 21.  »  [Pubmed]
  • Heterosubunit Composition and Crystal Structures of a Novel Bacterial M16B Metallopeptidase
  • Maruyama Y, Chuma A, Mikami B, Hashimoto W, Murata K
  • J Mol Biol. 2011 Mar 18;407(1):180-192. Epub 2011 Jan 22.  »  [Pubmed]
  • Structural determinants in streptococcal unsaturated glucuronyl hydrolase for recognition of glycosaminoglycan sulfate groups
  • Nakamichi Y, Maruyama Y, Mikami B, Hashimoto W, Murata K
  • J Biol Chem. 2011 Feb 25;286(8):6262-6271. Epub 2010 Dec 8.  »  [Pubmed]
  • Crystal structure of bacterial cell-surface alginate-binding protein with an M75 peptidase motif
  • Maruyama Y, Ochiai A, Mikami B, Hashimoto W, Murata K
  • Biochem Biophys Res Commun. 2011 Feb 18;405(3):411-416. Epub 2011 Jan 14.  »  [Pubmed]
  • The crystal structure of SDR-type pyridoxal 4-dehydrogenase of Mesorhizobium loti
  • Chu HN, Kobayashi J, Mikami B, Yagi T
  • Biosci Biotechnol Biochem. 2011;75(2):388-390. Epub 2011 Feb 7.  »  [Pubmed]
  • The mechanism of fibril formation of a non-inhibitory serpin ovalbumin revealed by the identification of amyloidogenic core regions
  • Tanaka N, Morimoto Y, Noguchi Y, Tada T, Waku T, Kunugi S, Morii T, Lee YF, Konno T, Takahashi N
  • J Biol Chem. 2011 Feb 18;286(7):5884-94. Epub 2010 Dec 14.  »  [Pubmed]
  • Single-crystal x-ray diffraction study of a magnetically oriented microcrystal arrays of lysozyme
  • Kimura F, Mizutani K, Mikami B, Kimura T
  • Cryst Growth Des. 2011;11(1):12-15.
  • [Review] Molecular design of seed storage proteins for enhanced food physicochemical properties
  • Tandang-Silvas MR, Tecson-Mendoza EM, Mikami B, Utsumi S, Maruyama N
  • Annu Rev Food Sci Technol. 2011;2:59-73.  »  [Pubmed]
  • [Review] The Development of Transgenic Crops to Improve Human Health by Advanced Utilization of Seed Storage Proteins
  • Maruyama N, Mikami B, Utsumi S
  • Biosci Biotechnol Biochem. 2011 May 30;75(5):823-828. Epub 2011 May 20.  »  [Pubmed]

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2010年

  • Refolding and polymerization pathways of neuroserpin
  • Takehara S, Zhang J, Yang X, Takahashi N, Mikami B, Onda M
  • J Mol Biol. 2010 Nov 12;403(5):751-762. Epub 2010 Aug 4.  »  [Pubmed]
  • Functional analysis of the cucumisin propeptide as a potent inhibitor of its mature enzyme
  • Nakagawa M, Ueyama M, Tsuruta H, Uno T, Kanamaru K, Mikami B, Yamagata H
  • J Biol Chem. 2010 Sep 24;285(39):29797-29807. Epub 2010 Jul 18.  »  [Pubmed]
  • The universal mechanism for iron translocation to the ferroxidase site in ferritin, which is mediated by the well conserved transit site
  • Masuda T, Goto F, Yoshihara T, Mikami B
  • Biochem Biophys Res Commun. 2010 Sep 10;400(1):94-99. 2010 Aug 10.  »  [Pubmed]
  • Crystallization and preliminary X-ray analysis of the major peanut allergen Ara h 1 core region
  • Cabanos C, Urabe H, Masuda T, Tandang-Silvas MR, Utsumi S, Mikami B, Maruyama N
  • Acta Crystallogr Sect F Struct Biol Cryst Commun. 2010 Sep 1;66(Pt 9):1071-1073. Epub 2010 Aug 26.  »  [Pubmed]
  • Crystallization and preliminary X-ray analysis of formate oxidase, an enzyme of the glucose-methanol-choline oxidoreductase family
  • Maeda Y, Doubayashi D, Ootake T, Oki M, Mikami B, Uchida H
  • Acta Crystallogr Sect F Struct Biol Cryst Commun. 2010 Sep 1;66(Pt 9):1064-1066. Epub 2010 Aug 26.  »  [Pubmed]
  • Molecular identification of unsaturated uronate reductase prerequisite for alginate metabolism in Sphingomonas sp. A1
  • Takase R, Ochiai A, Mikami B, Hashimoto W, Murata K
  • Biochim Biophys Acta. 2010 Sep;1804(9):1925-1936. Epub 2010 May 27.  »  [Pubmed]
  • Soybean Basic 7S Globulin: Subunit Heterogeneity and Molecular Evolution
  • Shutov AD, Prak K, Fukuda T, Rudakov SV, Rudakova AS, Tandang-Silvas MR, Fujiwara K, Mikami B, Utsumi S, Maruyama N
  • Biosci Biotechnol Biochem. 2010 Aug 23;74(8):1631-1634. Epub 2010 Aug 7.  »  [Pubmed]
  • Crystal structure of exotype alginate lyase Atu3025 from Agrobacterium tumefaciens
  • Ochiai A, Yamasaki M, Mikami B, Hashimoto W, Murata K
  • J Biol Chem. 2010 Aug 6;285(32):24519-24528. Epub 2010 May 27.  »  [Pubmed]
  • Expression, purification and preliminary crystallization of amaranth 11S proglobulin seed storage protein from Amaranthus hypochondriacus L.
  • Tandang-Silvas MR, Carrazco-Peña L, Barba de la Rosa AP, Osuna-Castro JA, Utsumi S, Mikami B, Maruyama N
  • Acta Crystallogr Sect F Struct Biol Cryst Commun. 2010 Aug 1;66(Pt 8):919-922. Epub 2010 Jul 29.  »  [Pubmed]
  • Mutational studies of the peptidoglycan hydrolase FlgJ of Sphingomonas sp. strain A1
  • Maruyama Y, Ochiai A, Itoh T, Mikami B, Hashimoto W, Murata K
  • J Basic Microbiol. 2010 Aug;50(4):311-317. Epub 2010 Jun 28.  »  [Pubmed]
  • Crystallization and preliminary X-ray analysis of L-azetidine-2-carboxylate hydrolase from Pseudomonas sp. strain A2C
  • Toyoda M, Jitsumori K, Mikami B, Wackett LP, Kurihara T, Esaki N
  • Acta Crystallogr Sect F Struct Biol Cryst Commun. 2010 Jul 1;66(Pt 7):801-804. Epub 2010 Jun 24.  »  [Pubmed]
  • X-ray analysis of bilirubin oxidase from Myrothecium verrucaria at 2.3 Å resolution using a twinned crystal
  • Mizutani K, Toyoda M, Sagara K, Takahashi N, Sato A, Kamitaka Y, Tsujimura S, Nakanishi Y, Sugiura T, Yamaguchi S, Kano K, Mikami B
  • Acta Crystallogr Sect F Struct Biol Cryst Commun. 2010 Jul 1;66(Pt 7):765-770. Epub 2010 Jun 23.  »  [Pubmed]
  • Conservation and divergence on plant seed 11S globulins based on crystal structures
  • Tandang-Silvas MR, Fukuda T, Fukuda C, Prak K, Cabanos C, Kimura A, Itoh T, Mikami B, Utsumi S, Maruyama N
  • Biochim Biophys Acta. 2010 Jul;1804(7):1432-1442. Epub 2010 Mar 6.  » [Pubmed]
  • Protein-Engineering Study of Contribution of Conceivable D-Serine Residues to the Thermostabilization of Ovalbumin under Alkaline Conditions
  • Takahashi N, Maeda M, Yamasaki M, Mikami B
  • Chem Biodivers. 2010 Jun 16;7(6):1634-1643.  »  [Pubmed]
  • Crystallization and preliminary X-ray analysis of SDR-type pyridoxal dehydrogenase from Mesorhizobium loti
  • Chu HN, Kobayashi J, Yoshikane Y, Mikami B, Yagi T
  • Acta Crystallogr Sect F Struct Biol Cryst Commun. 2010 Jun 1;66(Pt 6):718-720. Epub 2010 May 29.  »  [Pubmed]
  • Structural and functional characterization of recombinant human serum transferrin secreted from Pichia pastoris
  • Mizutani K, Hashimoto K, Takahashi N, Hirose M, Aibara S, Mikami B
  • Biosci Biotechnol Biochem. 2010 Feb;74(2):309-315. Epub 2010 Feb 7.  » [Pubmed]
  • Crystal structure of plant ferritin reveals a novel metal binding site that functions as a transit site for metal transfer in ferritin
  • Masuda T, Goto F, Yoshihara T, Mikami B
  • J Biol Chem. 2010 Feb 5;285(6):4049-4059. Epub 2009 Dec 9.  » [Pubmed]
  • Crystal structure of cold-active alkaline phosphatase from the psychrophile Shewanella sp.
  • Tsuruta H, Mikami B, Higashi T, Aizono Y
  • Biosci Biotechnol Biochem. 2010 Jan;74(1):69-74. Epub 2010 Jan 7.  » [Pubmed]

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過去の研究業績（2008～2009年）のページへ

過去の研究業績（2005～2007年）のページへ